C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: piggyBac transposable element derived 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000391860 PGBD5-001 ENSG00000177614 9606 - 1:230314482-230425729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000391860
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000391860 0.134±0.00 0.049±0.00 5.252±1.82 0.155±0.00 0.075±0.01 0.299±0.21 0.216±0.00 0.427±0.41 0.119±0.00 0.071±0.03 0.162±0.01 0.314±0.03 0.828±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A0 CIL_0008A0_0001 VISTA 1:229844601-230448319
CIL_000612 CIL_000612_0001 CGP 1:230057990-230425729
CIL_00060Z CIL_00060Z_0001 CGP 1:230314482-230693982

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052580 Pgbd5-201 protein_coding Mus_musculus 0 1574
ENSMUST00000140012 Pgbd5-001 protein_coding Mus_musculus 0 1574
ENSMUST00000136892 Pgbd5-002 protein_coding Mus_musculus 0 1491
ENSMUST00000172566 Pgbd5-003 protein_coding Mus_musculus 0 1491
ENSDART00000028285 pgbd5-001 protein_coding Danio_rerio 0 728
ENSMUST00000128312 Pgbd5-004 processed_transcript Mus_musculus 0 300
ENSMUST00000140126 Pgbd5-005 retained_intron Mus_musculus 0 272
ENSMUST00000183332 Rbm4b-007 retained_intron Mus_musculus 0.00005 57

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