C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: E74-like factor 2 (ets domain transcription factor)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394235 ELF2-001 ENSG00000109381 9606 - 4:139057220-139177218 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverLungOvaryENST00000394235
Transcript ID Adipose Bladder Breast Heart Kidney Liver Lung Ovary
ENST00000394235 1.007±0.00 1.542±0.00 1.389±0.00 0.456±0.00 0.722±0.00 0.252±0.00 2.908±0.00 1.122±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001Q CIL_00001Q_0001 CGP 4:138164097-139045752
CIL_0006YJ CIL_0006YJ_0002 CGP 4:139015789-139177218
CIL_00001P CIL_00001P_0001 CGP 4:139028112-139280338

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062009 Elf2-002 protein_coding Mus_musculus 0 3208
ENSMUST00000183463 Elf2-006 nonsense_mediated_decay Mus_musculus 0 2636
ENSMUST00000108051 Elf2-004 protein_coding Mus_musculus 0 2490
ENSMUST00000108053 Elf2-003 protein_coding Mus_musculus 0 2298
ENSMUST00000163748 Elf2-201 protein_coding Mus_musculus 0 2261
ENSMUST00000091144 Elf2-001 protein_coding Mus_musculus 0 2019
ENSMUST00000183338 Elf2-005 nonsense_mediated_decay Mus_musculus 0 387
ENSDART00000103383 elf2b-202 protein_coding Danio_rerio 0 228
ENSDART00000011414 elf2b-201 protein_coding Danio_rerio 0 228
ENSMUST00000156983 Elf2-008 retained_intron Mus_musculus 0 196
ENSMUST00000184677 Elf2-007 nonsense_mediated_decay Mus_musculus 0 196

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