C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C-type lectin domain family 2, member D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396690 CLEC2D-001 ENSG00000213443 9606 + 12:9695384-9696227 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyMuscleOvaryPlacentaTestisENST00000396690
Transcript ID Kidney Muscle Ovary Placenta Testis
ENST00000396690 0.672±0.00 0.251±0.00 4.004±0.89 1.829±1.78 14.597±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TA CIL_0000TA_0001 CGP 12:9594551-9699555

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 889
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 798
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 795
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 736
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 736
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 697
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 507
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 3e-37 159

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