C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap guanine nucleotide exchange factor (GEF) 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397085 RAPGEF4-003 ENSG00000091428 9606 + 2:173026626-173036795 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENST00000397085
Transcript ID Liver
ENST00000397085 0.700±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KA CIL_0004KA_0001 CGP 2:172555373-173052893
CIL_0003IJ CIL_0003IJ_0002 CGP 2:172735274-173268010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0007264 IEA small GTPase mediated signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153887 Rapgef4-006 processed_transcript Mus_musculus 0 760
ENSMUST00000028525 Rapgef4-005 protein_coding Mus_musculus 0 760
ENSMUST00000102698 Rapgef4-003 protein_coding Mus_musculus 0 760
ENSMUST00000090826 Rapgef4-001 protein_coding Mus_musculus 0 760
ENSMUST00000146970 Rapgef4-011 processed_transcript Mus_musculus 3e-36 156

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