C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly (A) polymerase alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169938 Papola-004 ENSMUSG00000021111 10090 + 12:105784743-105838944 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169938
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169938 4.633±0.05 11.622±3.64 24.696±5.51 6.537±0.00 6.426±1.61 7.002±1.67 11.959±6.79 6.001±1.19 3.341±0.30 7.361±1.16 13.006±5.10 6.936±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HI CIL_0003HI_0002 CGP 12:105705982-105838944
CIL_0003HJ CIL_0003HJ_0002 CGP 12:105784694-106077410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IBA mRNA splicing, via spliceosome
GO:0004652 IDA polynucleotide adenylyltransferase activity
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0006369 IBA termination of RNA polymerase II transcription
GO:0006378 IBA mRNA polyadenylation
GO:0043631 IDA RNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216277 PAPOLA-001 protein_coding Homo_sapiens 0 3849
ENST00000392990 PAPOLA-005 protein_coding Homo_sapiens 0 2037
ENST00000404991 PAPOLB-001 protein_coding Homo_sapiens 0 1351
ENST00000553357 PAPOLA-011 nonsense_mediated_decay Homo_sapiens 0 385
ENST00000553461 PAPOLA-025 protein_coding Homo_sapiens 0 542
ENST00000553689 PAPOLA-003 nonsense_mediated_decay Homo_sapiens 0 2379
ENST00000553940 PAPOLA-021 retained_intron Homo_sapiens 0 357
ENST00000554130 PAPOLA-012 processed_transcript Homo_sapiens 0 514
ENST00000554135 PAPOLA-019 retained_intron Homo_sapiens 0 361
ENST00000554666 PAPOLA-026 retained_intron Homo_sapiens 0 713
ENST00000554887 PAPOLA-010 processed_transcript Homo_sapiens 0 571
ENST00000555021 PAPOLA-016 retained_intron Homo_sapiens 0 353
ENST00000555131 PAPOLA-015 retained_intron Homo_sapiens 0 501
ENST00000555224 PAPOLA-024 retained_intron Homo_sapiens 0 411
ENST00000555508 PAPOLA-022 retained_intron Homo_sapiens 0 313
ENST00000555626 PAPOLA-006 protein_coding Homo_sapiens 0 2274
ENST00000555701 PAPOLA-009 retained_intron Homo_sapiens 0 355
ENST00000555912 PAPOLA-007 retained_intron Homo_sapiens 0 193
ENST00000556248 PAPOLA-014 processed_transcript Homo_sapiens 0 335
ENST00000556283 PAPOLA-018 retained_intron Homo_sapiens 0 846
ENST00000556459 PAPOLA-020 protein_coding Homo_sapiens 0 582
ENST00000556619 PAPOLA-013 protein_coding Homo_sapiens 0 483
ENST00000556787 PAPOLA-017 retained_intron Homo_sapiens 0 658
ENST00000557320 PAPOLA-002 protein_coding Homo_sapiens 0 898
ENST00000557406 PAPOLA-023 retained_intron Homo_sapiens 0 198
ENST00000557471 PAPOLA-004 protein_coding Homo_sapiens 0 863

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