C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly (A) polymerase alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109901 Papola-001 ENSMUSG00000021111 10090 + 12:105784694-105838807 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109901
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109901 15.366±4.60 14.473±2.66 18.514±0.00 13.327±10.56 15.782±6.14 20.729±4.77 10.151±1.74 20.253±1.41 16.450±8.18 17.963±4.08 4.215±0.61 25.387±6.13 22.099±8.83 19.914±8.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HI CIL_0003HI_0002 CGP 12:105705982-105838944
CIL_0003HJ CIL_0003HJ_0002 CGP 12:105784694-106077410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 ISS magnesium ion binding
GO:0000398 IBA mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0004652 IDA:ISS polynucleotide adenylyltransferase activity
GO:0005524 ISS ATP binding
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0006369 IBA termination of RNA polymerase II transcription
GO:0006378 IBA mRNA polyadenylation
GO:0030145 ISS manganese ion binding
GO:0043631 IDA:ISS RNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216277 PAPOLA-001 protein_coding Homo_sapiens 0 4747
ENST00000392990 PAPOLA-005 protein_coding Homo_sapiens 0 2988
ENST00000404991 PAPOLB-001 protein_coding Homo_sapiens 0 2034
ENST00000553357 PAPOLA-011 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000553461 PAPOLA-025 protein_coding Homo_sapiens 0 944
ENST00000553689 PAPOLA-003 nonsense_mediated_decay Homo_sapiens 0 2538
ENST00000553940 PAPOLA-021 retained_intron Homo_sapiens 0 357
ENST00000554130 PAPOLA-012 processed_transcript Homo_sapiens 0 532
ENST00000554135 PAPOLA-019 retained_intron Homo_sapiens 0 361
ENST00000554666 PAPOLA-026 retained_intron Homo_sapiens 0 713
ENST00000554887 PAPOLA-010 processed_transcript Homo_sapiens 0 571
ENST00000555021 PAPOLA-016 retained_intron Homo_sapiens 0 353
ENST00000555131 PAPOLA-015 retained_intron Homo_sapiens 0 501
ENST00000555224 PAPOLA-024 retained_intron Homo_sapiens 0 649
ENST00000555508 PAPOLA-022 retained_intron Homo_sapiens 0 313
ENST00000555626 PAPOLA-006 protein_coding Homo_sapiens 0 3145
ENST00000555701 PAPOLA-009 retained_intron Homo_sapiens 0 355
ENST00000555912 PAPOLA-007 retained_intron Homo_sapiens 0 244
ENST00000556248 PAPOLA-014 processed_transcript Homo_sapiens 0 335
ENST00000556283 PAPOLA-018 retained_intron Homo_sapiens 0 846
ENST00000556459 PAPOLA-020 protein_coding Homo_sapiens 0 582
ENST00000556619 PAPOLA-013 protein_coding Homo_sapiens 0 483
ENST00000556787 PAPOLA-017 retained_intron Homo_sapiens 0 658
ENST00000557320 PAPOLA-002 protein_coding Homo_sapiens 0 1500
ENST00000557406 PAPOLA-023 retained_intron Homo_sapiens 0 244
ENST00000557471 PAPOLA-004 protein_coding Homo_sapiens 0 1022

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