C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416139 RP11-384C4.3-001 ENSG00000225338 9606 - 1:212309051-212309518 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000416139
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000416139 0.357±0.00 0.535±0.00 0.229±0.07 0.117±0.00 0.328±0.00 0.069±0.00 0.467±0.00 0.034±0.00 0.095±0.04 0.209±0.00 0.050±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000129 CIL_000129_0002 CGP 1:212035553-212361863
CIL_0008JQ CIL_0008JQ_0001 VISTA 1:212231404-212833951

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 555
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 549
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 512
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 507
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000105172 Gm6096-201 protein_coding Mus_musculus 0 324
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 2e-16 90

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