C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6096
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105172 Gm6096-201 ENSMUSG00000078380 10090 + 7:34251038-34251493 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105172
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105172 0.548±0.38 0.298±0.03 0.259±0.00 0.796±0.60 0.533±0.29 0.417±0.15 0.383±0.07 0.229±0.08 0.289±0.07 1.179±0.50 0.315±0.13 0.791±0.44 0.375±0.28 0.223±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005575 ND cellular_component
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332361 RP11-106A1.2-001 processed_pseudogene Homo_sapiens 0 346
ENST00000416139 RP11-384C4.3-001 processed_pseudogene Homo_sapiens 0 324
ENST00000422514 RPL23A-001 protein_coding Homo_sapiens 0 379
ENST00000437246 AC005884.1-001 processed_pseudogene Homo_sapiens 0 357
ENST00000450202 RP5-915N17.3-001 processed_pseudogene Homo_sapiens 0 239
ENST00000471152 RP11-3P17.3-001 processed_pseudogene Homo_sapiens 0 379
ENST00000475608 RP11-16F15.1-001 processed_pseudogene Homo_sapiens 0 366
ENST00000479658 AC114752.2-001 processed_pseudogene Homo_sapiens 0 339
ENST00000492507 RPL23AP73-001 processed_pseudogene Homo_sapiens 0 274
ENST00000576277 CTC-281F24.2-001 processed_pseudogene Homo_sapiens 4e-22 108
ENST00000582736 RPL23A-008 retained_intron Homo_sapiens 8e-22 108

Loading