C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L23A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102483 Rpl23a-001 ENSMUSG00000058546 10090 - 11:78180935-78183584 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102483
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102483 231.313±82.63 1282.405±1.76 433.428±280.56 152.103±48.94 195.253±71.47 145.809±8.59 184.703±26.75 754.547±754.54 155.590±19.12 311.165±15.25 303.720±376.22 792.837±541.11 91.444±39.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0008150 ND biological_process
GO:0019843 IEA rRNA binding
GO:0031932 IDA TORC2 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332361 RP11-106A1.2-001 processed_pseudogene Homo_sapiens 0 551
ENST00000355731 RPL23A-003 protein_coding Homo_sapiens 0 601
ENST00000394935 RPL23A-004 protein_coding Homo_sapiens 0 603
ENST00000394938 RPL23A-009 protein_coding Homo_sapiens 0 603
ENST00000395315 RPL23AP32-001 processed_pseudogene Homo_sapiens 0 459
ENST00000406913 RP11-129H15.3-001 processed_pseudogene Homo_sapiens 0 315
ENST00000416139 RP11-384C4.3-001 processed_pseudogene Homo_sapiens 0 555
ENST00000422514 RPL23A-001 protein_coding Homo_sapiens 0 660
ENST00000437246 AC005884.1-001 processed_pseudogene Homo_sapiens 0 588
ENST00000437556 RPL23AP22-001 processed_pseudogene Homo_sapiens 0 298
ENST00000440453 RP11-170J3.2-001 processed_pseudogene Homo_sapiens 0 499
ENST00000446445 AC139452.2-001 processed_pseudogene Homo_sapiens 0 532
ENST00000453844 RPL23AP3-001 processed_pseudogene Homo_sapiens 0 534
ENST00000456160 AC009974.11-001 processed_pseudogene Homo_sapiens 0 492
ENST00000467573 RPL23AP12-001 processed_pseudogene Homo_sapiens 0 484
ENST00000469465 RPL23AP64-001 processed_pseudogene Homo_sapiens 0 279
ENST00000471152 RP11-3P17.3-001 processed_pseudogene Homo_sapiens 0 604
ENST00000471227 RPL23AP2-001 processed_pseudogene Homo_sapiens 0 564
ENST00000472628 RPL23A-006 protein_coding Homo_sapiens 0 604
ENST00000475608 RP11-16F15.1-001 processed_pseudogene Homo_sapiens 0 545
ENST00000479658 AC114752.2-001 processed_pseudogene Homo_sapiens 0 579
ENST00000484754 RP11-4H14.1-001 processed_pseudogene Homo_sapiens 0 370
ENST00000491601 RP11-58O9.1-001 processed_pseudogene Homo_sapiens 0 466
ENST00000492507 RPL23AP73-001 processed_pseudogene Homo_sapiens 0 383
ENST00000492925 RP11-413E6.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000496182 RPL23A-002 protein_coding Homo_sapiens 0 603
ENST00000498163 RP11-1149O23.1-001 processed_pseudogene Homo_sapiens 0 348
ENST00000498752 RP11-472I20.1-001 processed_pseudogene Homo_sapiens 0 510
ENST00000569211 CTC-661I16.1-001 processed_pseudogene Homo_sapiens 0 368
ENST00000576277 CTC-281F24.2-001 processed_pseudogene Homo_sapiens 0 206
ENST00000578181 RPL23A-011 protein_coding Homo_sapiens 0 538
ENST00000582736 RPL23A-008 retained_intron Homo_sapiens 0 307
ENST00000588044 RPL23AP77-001 processed_pseudogene Homo_sapiens 0 514
ENST00000592379 AD000091.3-001 processed_pseudogene Homo_sapiens 0 335
ENST00000623642 AL589822.1-201 pseudogene Homo_sapiens 0 555

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