C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417747 SMARCE1P1-001 ENSG00000225215 9606 - 11:107403404-107404589 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000417747
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000417747 0.022±0.00 0.048±0.00 0.812±0.00 0.246±0.00 0.668±0.00 0.502±0.00 0.104±0.07 0.134±0.00 1.040±0.00 0.354±0.29 0.057±0.05 0.168±0.18 0.058±0.00 0.045±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103133 Smarce1-001 protein_coding Mus_musculus 0 1195
ENSMUST00000180067 Gm1815-201 processed_pseudogene Mus_musculus 0 942
ENSMUST00000178171 Gm8494-201 processed_pseudogene Mus_musculus 0 743
ENSMUST00000116179 Gm11864-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000155062 Smarce1-005 processed_transcript Mus_musculus 0 496
ENSMUST00000121549 Gm12539-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000135040 Smarce1-003 processed_transcript Mus_musculus 0 294
ENSMUST00000128707 Smarce1-004 processed_transcript Mus_musculus 2e-40 171
ENSMUST00000128215 Smarce1-002 processed_transcript Mus_musculus 0.0000000000001 82

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