C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 1815
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180067 Gm1815-201 ENSMUSG00000094568 10090 - 8:41657593-41658669 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000180067
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000180067 0.125±0.09 0.107±0.00 1.010±0.30 0.051±0.00 0.125±0.04 0.081±0.06 0.102±0.04 0.224±0.12 0.115±0.01 0.034±0.01 0.270±0.12 0.084±0.07 0.813±1.33

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264640 SMARCE1-009 protein_coding Homo_sapiens 0 577
ENST00000348513 SMARCE1-001 protein_coding Homo_sapiens 0 1430
ENST00000377808 SMARCE1-008 protein_coding Homo_sapiens 0 1195
ENST00000398372 SMARCE1P6-001 processed_pseudogene Homo_sapiens 0 1007
ENST00000400122 SMARCE1-015 protein_coding Homo_sapiens 0 1195
ENST00000412207 SMARCE1P5-001 processed_pseudogene Homo_sapiens 0 1249
ENST00000417747 SMARCE1P1-001 processed_pseudogene Homo_sapiens 0 942
ENST00000431889 SMARCE1-012 protein_coding Homo_sapiens 0 1430
ENST00000442896 SMARCE1P2-001 processed_pseudogene Homo_sapiens 0 1099
ENST00000447024 SMARCE1-010 protein_coding Homo_sapiens 0 497
ENST00000469334 SMARCE1-003 retained_intron Homo_sapiens 0 826
ENST00000476049 KRT222-001 nonsense_mediated_decay Homo_sapiens 0 1284
ENST00000478349 SMARCE1-018 protein_coding Homo_sapiens 0 1079
ENST00000481231 SMARCE1-007 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000493660 SMARCE1-004 retained_intron Homo_sapiens 0 592
ENST00000523647 SMARCE1P4-001 processed_pseudogene Homo_sapiens 5e-25 117
ENST00000553649 SMARCE1P3-001 processed_pseudogene Homo_sapiens 0 1129
ENST00000577721 SMARCE1-017 protein_coding Homo_sapiens 0 553
ENST00000578044 SMARCE1-014 protein_coding Homo_sapiens 0 1430
ENST00000578112 SMARCE1-011 nonsense_mediated_decay Homo_sapiens 0 1430
ENST00000578995 SMARCE1-020 retained_intron Homo_sapiens 0 580
ENST00000580419 SMARCE1-013 protein_coding Homo_sapiens 0 1430
ENST00000580654 SMARCE1-016 protein_coding Homo_sapiens 0 553
ENST00000582955 SMARCE1-019 protein_coding Homo_sapiens 0 366
ENST00000583294 SMARCE1-021 retained_intron Homo_sapiens 0 283

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