C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8494
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178171 Gm8494-201 ENSMUSG00000094090 10090 + 5:146575194-146576123 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000178171
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000178171 0.069±0.02 0.023±0.01 1.365±1.17 0.312±0.13 0.185±0.00 0.171±0.03 0.096±0.05 0.273±0.49 0.116±0.06 0.044±0.00 0.145±0.09 0.040±0.03 1.643±3.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264640 SMARCE1-009 protein_coding Homo_sapiens 0 582
ENST00000348513 SMARCE1-001 protein_coding Homo_sapiens 0 1208
ENST00000377808 SMARCE1-008 protein_coding Homo_sapiens 0 952
ENST00000398372 SMARCE1P6-001 processed_pseudogene Homo_sapiens 0 802
ENST00000400122 SMARCE1-015 protein_coding Homo_sapiens 0 952
ENST00000412207 SMARCE1P5-001 processed_pseudogene Homo_sapiens 0 1072
ENST00000417747 SMARCE1P1-001 processed_pseudogene Homo_sapiens 0 743
ENST00000431889 SMARCE1-012 protein_coding Homo_sapiens 0 1208
ENST00000447024 SMARCE1-010 protein_coding Homo_sapiens 0 508
ENST00000469334 SMARCE1-003 retained_intron Homo_sapiens 0 649
ENST00000476049 KRT222-001 nonsense_mediated_decay Homo_sapiens 0 1203
ENST00000478349 SMARCE1-018 protein_coding Homo_sapiens 0 824
ENST00000481231 SMARCE1-007 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000493660 SMARCE1-004 retained_intron Homo_sapiens 0 348
ENST00000553649 SMARCE1P3-001 processed_pseudogene Homo_sapiens 0 948
ENST00000577721 SMARCE1-017 protein_coding Homo_sapiens 0 309
ENST00000578044 SMARCE1-014 protein_coding Homo_sapiens 0 1208
ENST00000578112 SMARCE1-011 nonsense_mediated_decay Homo_sapiens 0 1208
ENST00000578995 SMARCE1-020 retained_intron Homo_sapiens 0 337
ENST00000580419 SMARCE1-013 protein_coding Homo_sapiens 0 1208
ENST00000580654 SMARCE1-016 protein_coding Homo_sapiens 0 309
ENST00000582955 SMARCE1-019 protein_coding Homo_sapiens 6e-28 128
ENST00000583294 SMARCE1-021 retained_intron Homo_sapiens 5e-38 161

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