C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A1 pseudogene 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421800 EIF4A1P7-001 ENSG00000235472 9606 + 13:28598833-28600052 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000421800
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000421800 0.045±0.00 0.059±0.00 0.012±0.00 0.033±0.00 0.011±0.00 0.072±0.00 0.088±0.00 0.020±0.00 0.020±0.01 0.039±0.00 0.027±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004CL CIL_0004CL_0001 CGP 13:28300344-28678925

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163666 Eif4a1-001 protein_coding Mus_musculus 0 1439
ENSMUST00000122226 Eif4a-ps4-001 processed_pseudogene Mus_musculus 0 1432
ENSMUST00000072982 Gm5513-201 processed_pseudogene Mus_musculus 0 1321
ENSMUST00000118589 Gm15568-001 processed_pseudogene Mus_musculus 0 966
ENSMUST00000128519 Eif4a1-012 retained_intron Mus_musculus 0 867
ENSMUST00000102589 Eif4a1-013 nonsense_mediated_decay Mus_musculus 0 773
ENSMUST00000121086 Gm11258-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000123995 Eif4a1-002 retained_intron Mus_musculus 0 577
ENSMUST00000139299 Eif4a1-006 processed_transcript Mus_musculus 0 399
ENSMUST00000140310 Eif4a1-007 processed_transcript Mus_musculus 0 392
ENSMUST00000142214 Eif4a1-003 processed_transcript Mus_musculus 0 370
ENSMUST00000127677 Eif4a1-008 processed_transcript Mus_musculus 0 329
ENSMUST00000142348 Eif4a1-010 processed_transcript Mus_musculus 0 318
ENSMUST00000145289 Eif4a1-004 retained_intron Mus_musculus 0 252
ENSMUST00000129295 Eif4a1-005 retained_intron Mus_musculus 0 226
ENSMUST00000140186 Eif4a1-011 processed_transcript Mus_musculus 9.94922e-44 182
ENSMUST00000133067 Eif4a1-009 processed_transcript Mus_musculus 3e-29 134

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