C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163666 Eif4a1-001 ENSMUSG00000059796 10090 - 11:69666936-69672317 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163666 95.196±21.31 10.344±1.16 224.251±3.92 201.618±118.38 30.206±7.56 38.099±16.91 21.332±6.27 38.715±6.28 183.392±167.72 53.335±21.77 41.306±3.56 91.712±84.06 246.449±119.22 29.184±9.76

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0003743 IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006413 IEA translational initiation
GO:0008026 IEA ATP-dependent helicase activity
GO:0016020 IEA membrane
GO:0031100 IEA organ regeneration
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011878 eif4a1b-001 protein_coding Danio_rerio 0 822
ENSDART00000140602 eif4a1b-002 processed_transcript Danio_rerio 0 486
ENST00000293831 EIF4A1-001 protein_coding Homo_sapiens 0 1875
ENST00000394444 EIF4A1P8-001 processed_pseudogene Homo_sapiens 0 1208
ENST00000396527 EIF4A1-003 retained_intron Homo_sapiens 0 558
ENST00000411521 EIF4A1P3-001 processed_pseudogene Homo_sapiens 0 265
ENST00000421800 EIF4A1P7-001 processed_pseudogene Homo_sapiens 0 1439
ENST00000422633 EIF4A1P2-001 processed_pseudogene Homo_sapiens 0 1616
ENST00000428062 EIF4A1P5-001 processed_pseudogene Homo_sapiens 0 1293
ENST00000428832 EIF4A1P10-001 processed_pseudogene Homo_sapiens 0 1648
ENST00000448133 EIF4A1P6-001 processed_pseudogene Homo_sapiens 0 1308
ENST00000451239 EIF4A1P11-001 processed_pseudogene Homo_sapiens 0 272
ENST00000550578 RP11-1136G11.6-001 processed_pseudogene Homo_sapiens 0 1517
ENST00000576035 EIF4A1P9-001 processed_pseudogene Homo_sapiens 0 1406
ENST00000577269 EIF4A1-007 protein_coding Homo_sapiens 0 1419
ENST00000577731 EIF4A1-034 retained_intron Homo_sapiens 0 699
ENST00000577738 EIF4A1-016 retained_intron Homo_sapiens 0 459
ENST00000577929 EIF4A1-018 protein_coding Homo_sapiens 0 412
ENST00000578324 EIF4A1-009 retained_intron Homo_sapiens 0 1380
ENST00000578476 EIF4A1-014 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000578495 EIF4A1-026 protein_coding Homo_sapiens 0 1277
ENST00000578569 EIF4A1-029 retained_intron Homo_sapiens 0 527
ENST00000578754 EIF4A1-023 protein_coding Homo_sapiens 0 529
ENST00000579085 EIF4A1-019 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000579139 EIF4A1-013 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000580461 EIF4A1-002 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000580886 EIF4A1-012 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000580888 EIF4A1-038 nonsense_mediated_decay Homo_sapiens 0 837
ENST00000581384 EIF4A1-037 protein_coding Homo_sapiens 0 837
ENST00000581544 EIF4A1-004 nonsense_mediated_decay Homo_sapiens 0 800
ENST00000581770 EIF4A1-015 protein_coding Homo_sapiens 0 335
ENST00000581841 EIF4A1-035 retained_intron Homo_sapiens 0 322
ENST00000582050 EIF4A1-032 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000582169 EIF4A1-024 protein_coding Homo_sapiens 0 638
ENST00000582213 EIF4A1-021 retained_intron Homo_sapiens 0 379
ENST00000582746 EIF4A1-008 protein_coding Homo_sapiens 0 1408
ENST00000582848 EIF4A1-027 retained_intron Homo_sapiens 0 715
ENST00000583217 EIF4A1-030 retained_intron Homo_sapiens 0 403
ENST00000583389 EIF4A1-031 protein_coding Homo_sapiens 0 913
ENST00000583802 EIF4A1-022 protein_coding Homo_sapiens 0 741
ENST00000583899 EIF4A1-020 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000584054 EIF4A1-011 retained_intron Homo_sapiens 0 318
ENST00000584712 EIF4A1-036 retained_intron Homo_sapiens 0 512
ENST00000584784 EIF4A1-028 protein_coding Homo_sapiens 0 896
ENST00000584798 EIF4A1-010 retained_intron Homo_sapiens 0 200
ENST00000584860 EIF4A1-017 protein_coding Homo_sapiens 0 1129
ENST00000584901 EIF4A1-006 retained_intron Homo_sapiens 0 749
ENST00000585024 EIF4A1-025 protein_coding Homo_sapiens 0 800
ENST00000603184 RP11-175E9.2-001 processed_pseudogene Homo_sapiens 0 276
ENST00000614237 SENP3-EIF4A1-001 nonsense_mediated_decay Homo_sapiens 0 1875

Loading