C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122226 Eif4a-ps4-001 ENSMUSG00000101188 10090 + 1:60703932-60705149 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000122226
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000122226 13.929±1.30 5.217±1.34 8.868±3.83 16.163±3.49 4.757±0.97 3.616±1.49 2.787±0.18 4.071±0.74 15.161±9.45 3.857±1.10 0.657±0.22 14.532±7.26 3.758±2.27 3.181±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QX CIL_0001QX_0002 CGP 1:60482292-60773359

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011878 eif4a1b-001 protein_coding Danio_rerio 0 817
ENSDART00000140602 eif4a1b-002 processed_transcript Danio_rerio 0 481
ENST00000293831 EIF4A1-001 protein_coding Homo_sapiens 0 1749
ENST00000394444 EIF4A1P8-001 processed_pseudogene Homo_sapiens 0 1203
ENST00000396527 EIF4A1-003 retained_intron Homo_sapiens 0 553
ENST00000411521 EIF4A1P3-001 processed_pseudogene Homo_sapiens 0 263
ENST00000421800 EIF4A1P7-001 processed_pseudogene Homo_sapiens 0 1432
ENST00000422633 EIF4A1P2-001 processed_pseudogene Homo_sapiens 0 1609
ENST00000428062 EIF4A1P5-001 processed_pseudogene Homo_sapiens 0 1288
ENST00000428832 EIF4A1P10-001 processed_pseudogene Homo_sapiens 0 1642
ENST00000448133 EIF4A1P6-001 processed_pseudogene Homo_sapiens 0 1303
ENST00000451239 EIF4A1P11-001 processed_pseudogene Homo_sapiens 0 270
ENST00000550578 RP11-1136G11.6-001 processed_pseudogene Homo_sapiens 0 1511
ENST00000576035 EIF4A1P9-001 processed_pseudogene Homo_sapiens 0 1411
ENST00000577269 EIF4A1-007 protein_coding Homo_sapiens 0 1404
ENST00000577731 EIF4A1-034 retained_intron Homo_sapiens 0 693
ENST00000577738 EIF4A1-016 retained_intron Homo_sapiens 0 459
ENST00000577929 EIF4A1-018 protein_coding Homo_sapiens 0 412
ENST00000578324 EIF4A1-009 retained_intron Homo_sapiens 0 1375
ENST00000578476 EIF4A1-014 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000578495 EIF4A1-026 protein_coding Homo_sapiens 0 1247
ENST00000578569 EIF4A1-029 retained_intron Homo_sapiens 0 527
ENST00000578754 EIF4A1-023 protein_coding Homo_sapiens 0 523
ENST00000579085 EIF4A1-019 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000579139 EIF4A1-013 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000580461 EIF4A1-002 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000580886 EIF4A1-012 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000580888 EIF4A1-038 nonsense_mediated_decay Homo_sapiens 0 808
ENST00000581384 EIF4A1-037 protein_coding Homo_sapiens 0 832
ENST00000581544 EIF4A1-004 nonsense_mediated_decay Homo_sapiens 0 795
ENST00000581770 EIF4A1-015 protein_coding Homo_sapiens 0 335
ENST00000581841 EIF4A1-035 retained_intron Homo_sapiens 0 322
ENST00000582050 EIF4A1-032 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000582169 EIF4A1-024 protein_coding Homo_sapiens 0 617
ENST00000582213 EIF4A1-021 retained_intron Homo_sapiens 0 379
ENST00000582746 EIF4A1-008 protein_coding Homo_sapiens 0 1402
ENST00000582848 EIF4A1-027 retained_intron Homo_sapiens 0 695
ENST00000583217 EIF4A1-030 retained_intron Homo_sapiens 0 403
ENST00000583389 EIF4A1-031 protein_coding Homo_sapiens 0 907
ENST00000583802 EIF4A1-022 protein_coding Homo_sapiens 0 736
ENST00000583899 EIF4A1-020 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000584054 EIF4A1-011 retained_intron Homo_sapiens 0 294
ENST00000584712 EIF4A1-036 retained_intron Homo_sapiens 0 488
ENST00000584784 EIF4A1-028 protein_coding Homo_sapiens 0 883
ENST00000584798 EIF4A1-010 retained_intron Homo_sapiens 0 200
ENST00000584860 EIF4A1-017 protein_coding Homo_sapiens 0 1123
ENST00000584901 EIF4A1-006 retained_intron Homo_sapiens 0 728
ENST00000585024 EIF4A1-025 protein_coding Homo_sapiens 0 774
ENST00000603184 RP11-175E9.2-001 processed_pseudogene Homo_sapiens 0 276
ENST00000614237 SENP3-EIF4A1-001 nonsense_mediated_decay Homo_sapiens 0 1749

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