C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, epsilon
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428696 SGCE-004 ENSG00000127990 9606 - 7:94585412-94656098 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungMuscleENST00000428696
Transcript ID Brain Breast Colon Heart Kidney Lung Muscle
ENST00000428696 4.056±0.50 2.713±0.00 0.422±0.00 1.777±0.00 4.000±0.00 5.787±0.00 0.948±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082O CIL_00082O_0001 VISTA 7:94046650-94649568
CIL_0007XR CIL_0007XR_0001 VISTA 7:94067785-94669696
CIL_00095G CIL_00095G_0001 VISTA 7:94074791-94676705
CIL_0008ZR CIL_0008ZR_0001 VISTA 7:94144032-94745602
CIL_0004SP CIL_0004SP_0002 CGP 7:94509219-94656209
CIL_0006DZ CIL_0006DZ_0001 CGP 7:94585230-94669695

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005794 ISS Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0005886 ISS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007160 TAS cell-matrix adhesion
GO:0007517 TAS muscle organ development
GO:0016010 IDA dystrophin-associated glycoprotein complex
GO:0016012 IEA sarcoglycan complex
GO:0016020 IEA membrane
GO:0032590 ISS dendrite membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000123907 Sgce-005 protein_coding Mus_musculus 0 1679
ENSMUST00000090686 Sgce-007 protein_coding Mus_musculus 0 1592
ENSMUST00000004750 Sgce-201 protein_coding Mus_musculus 0 1591
ENSMUST00000126151 Sgce-003 protein_coding Mus_musculus 0 1506
ENSMUST00000101677 Sgce-202 protein_coding Mus_musculus 0 1343
ENSMUST00000128109 Sgce-006 processed_transcript Mus_musculus 0 1343
ENSMUST00000115579 Sgce-001 protein_coding Mus_musculus 0 1343
ENSMUST00000133306 Sgce-004 protein_coding Mus_musculus 0 1258
ENSMUST00000115577 Sgce-203 protein_coding Mus_musculus 0 1195
ENSMUST00000153284 Sgce-002 processed_transcript Mus_musculus 0 1195
ENSMUST00000139029 Sgce-008 processed_transcript Mus_musculus 0 998

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