C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP58 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000191142 Nop58-001 ENSMUSG00000026020 10090 + 1:59685009-59719044 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000191142
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000191142 0.530±0.34 0.379±0.09 0.817±0.00 1.938±0.68 0.316±0.05 0.146±0.03 0.188±0.05 0.990±0.93 0.338±0.06 0.424±0.07 1.046±0.44 1.331±0.12 0.399±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020T CIL_00020T_0002 CGP 1:59586558-59719044
CIL_00020S CIL_00020S_0002 CGP 1:59684971-59879014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IC nucleolus
GO:0005732 IEA small nucleolar ribonucleoprotein complex
GO:0005737 IEA cytoplasm
GO:0006608 IEA snRNP protein import into nucleus
GO:0015030 IEA Cajal body
GO:0016020 IEA membrane
GO:0030515 IEA snoRNA binding
GO:0030519 ISO snoRNP binding
GO:0030529 IEA ribonucleoprotein complex
GO:0042254 IEA ribosome biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070761 IEA pre-snoRNP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264279 NOP58-001 protein_coding Homo_sapiens 0 2167
ENST00000426814 NOP58-006 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000433543 NOP58-008 nonsense_mediated_decay Homo_sapiens 0 712
ENST00000467734 NOP58-007 processed_transcript Homo_sapiens 0 377
ENST00000472050 NOP58-003 processed_transcript Homo_sapiens 0 532
ENST00000478941 NOP58-004 retained_intron Homo_sapiens 0 383
ENST00000488403 NOP58-002 retained_intron Homo_sapiens 0 680
ENST00000492688 NOP58-005 processed_transcript Homo_sapiens 0 822
ENST00000492740 NOP58-009 retained_intron Homo_sapiens 0 213
ENST00000564443 RP11-430C1.2-001 processed_pseudogene Homo_sapiens 0 388

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