C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP58 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027174 Nop58-002 ENSMUSG00000026020 10090 + 1:59684977-59711510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027174 8.094±4.49 3.052±0.67 6.157±0.11 9.607±5.08 5.448±0.87 5.202±1.33 3.726±0.38 4.217±1.06 10.800±8.59 4.625±0.84 3.564±0.38 8.639±5.72 21.036±14.26 14.155±1.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020T CIL_00020T_0002 CGP 1:59586558-59719044
CIL_00020S CIL_00020S_0002 CGP 1:59684971-59879014

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264279 NOP58-001 protein_coding Homo_sapiens 0 1827
ENST00000426814 NOP58-006 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000433543 NOP58-008 nonsense_mediated_decay Homo_sapiens 0 712
ENST00000467734 NOP58-007 processed_transcript Homo_sapiens 0 377
ENST00000472050 NOP58-003 processed_transcript Homo_sapiens 0 532
ENST00000478941 NOP58-004 retained_intron Homo_sapiens 0 383
ENST00000488403 NOP58-002 retained_intron Homo_sapiens 0 680
ENST00000492688 NOP58-005 processed_transcript Homo_sapiens 0 822
ENST00000492740 NOP58-009 retained_intron Homo_sapiens 0 213
ENST00000564443 RP11-430C1.2-001 processed_pseudogene Homo_sapiens 4e-28 128

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