Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	sarcoglycan, epsilon
ENST00000437425	SGCE-002	ENSG00000127990	9606	-	7:94585250-94656166	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000437425	3.052±0.00	7.291±0.00	5.059±0.00	5.452±0.00	15.707±0.00	2.847±0.00	6.091±0.00	2.023±0.00	9.136±0.00	0.275±0.00	10.787±10.06	7.897±0.63	4.792±0.00

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_00082O	CIL_00082O_0001	VISTA	7:94046650-94649568
CIL_0007XR	CIL_0007XR_0001	VISTA	7:94067785-94669696
CIL_00095G	CIL_00095G_0001	VISTA	7:94074791-94676705
CIL_0008ZR	CIL_0008ZR_0001	VISTA	7:94144032-94745602
CIL_0004SP	CIL_0004SP_0002	CGP	7:94509219-94656209
CIL_0006DZ	CIL_0006DZ_0001	CGP	7:94585230-94669695

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005509	IEA	calcium ion binding
GO:0016012	IEA	sarcoglycan complex
GO:0016020	IEA	membrane

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000115577	Sgce-203	protein_coding	Mus_musculus	0	1504
ENSMUST00000153284	Sgce-002	processed_transcript	Mus_musculus	0	1504
ENSMUST00000115579	Sgce-001	protein_coding	Mus_musculus	0	1504
ENSMUST00000090686	Sgce-007	protein_coding	Mus_musculus	0	1334
ENSMUST00000101677	Sgce-202	protein_coding	Mus_musculus	0	1332
ENSMUST00000133306	Sgce-004	protein_coding	Mus_musculus	0	1332
ENSMUST00000128109	Sgce-006	processed_transcript	Mus_musculus	0	1275
ENSMUST00000123907	Sgce-005	protein_coding	Mus_musculus	0	1164
ENSMUST00000004750	Sgce-201	protein_coding	Mus_musculus	0	1162
ENSMUST00000126151	Sgce-003	protein_coding	Mus_musculus	0	1162
ENSMUST00000139029	Sgce-008	processed_transcript	Mus_musculus	0	846

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