C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cortactin binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441556 CTTNBP2-012 ENSG00000077063 9606 - 7:117710863-117873429 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverPlacentaTestisENST00000441556
Transcript ID Adipose Brain Breast Heart Kidney Liver Placenta Testis
ENST00000441556 0.342±0.00 1.439±0.98 0.328±0.00 0.233±0.00 0.604±0.00 1.225±0.00 0.203±0.02 0.524±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063R CIL_00063R_0002 CGP 7:117363222-117715971
CIL_0005U6 CIL_0005U6_0002 CGP 7:117465784-117874139
CIL_0003QX CIL_0003QX_0001 CGP 7:117710651-118192824

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148602 Cttnbp2-001 nonsense_mediated_decay Mus_musculus 0 5494
ENSMUST00000090601 Cttnbp2-003 protein_coding Mus_musculus 0 3598
ENSMUST00000152499 Cttnbp2-005 retained_intron Mus_musculus 0 3596
ENSMUST00000146775 Cttnbp2-004 protein_coding Mus_musculus 0 3591
ENSMUST00000139557 Cttnbp2-002 retained_intron Mus_musculus 0 1906
ENSMUST00000129669 Cttnbp2-008 protein_coding Mus_musculus 0 643
ENSMUST00000149570 Cttnbp2-010 nonsense_mediated_decay Mus_musculus 0 494
ENSMUST00000142963 Cttnbp2-007 protein_coding Mus_musculus 0 416
ENSMUST00000141581 Cttnbp2-009 protein_coding Mus_musculus 0 388
ENSMUST00000140416 Cttnbp2-006 retained_intron Mus_musculus 0 250

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