C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box binding protein 1 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442962 YBX1P6-001 ENSG00000213539 9606 - 9:109532830-109534332 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000442962
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000442962 0.018±0.00 0.078±0.00 0.044±0.02 0.019±0.00 0.019±0.00 0.021±0.00 0.143±0.00 0.036±0.01 0.160±0.10 0.088±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GE CIL_0001GE_0001 CGP 9:109375466-109946703

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079644 Ybx1-001 protein_coding Mus_musculus 0 1136
ENSMUST00000117567 Gm11560-001 processed_pseudogene Mus_musculus 0 990
ENSMUST00000127737 Ybx1-004 protein_coding Mus_musculus 0 699
ENSMUST00000119046 Gm15808-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000142884 Ybx1-005 processed_transcript Mus_musculus 0 283
ENSMUST00000139897 Ybx1-003 processed_transcript Mus_musculus 0 283
ENSMUST00000152733 Ybx1-002 processed_transcript Mus_musculus 0 250
ENSMUST00000145976 Ybx1-007 processed_transcript Mus_musculus 0 241
ENSMUST00000144992 Ybx1-006 processed_transcript Mus_musculus 4e-37 159
ENSMUST00000123576 E130201H02Rik-001 processed_pseudogene Mus_musculus 0 390

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