C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449818 NPM1P39-001 ENSG00000225159 9606 + 1:27206930-27207796 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000449818
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000449818 0.025±0.00 0.159±0.00 0.026±0.00 0.090±0.00 0.130±0.00 0.013±0.00 0.023±0.00 0.012±0.00 0.023±0.00 0.214±0.01 0.169±0.00 0.311±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0001 VISTA 1:27203963-27805666

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 1053
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 920
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 894
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 893
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 817
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 739
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 651
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 2e-38 163

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