C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455099 PAX6-016 ENSG00000007372 9606 - 11:31794780-31806921 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KI CIL_0008KI_0001 VISTA 11:31301275-31902571
CIL_0007UQ CIL_0007UQ_0001 VISTA 11:31363809-31965336
CIL_0008UP CIL_0008UP_0001 VISTA 11:31463875-32065678
CIL_0007XG CIL_0007XG_0001 VISTA 11:31494904-32096873
CIL_000914 CIL_000914_0001 VISTA 11:31574048-32177516
CIL_0007JA CIL_0007JA_0002 UCNEbase 11:31639896-31819124
CIL_0007PY CIL_0007PY_0001 VISTA 11:31667627-32268476
CIL_00096J CIL_00096J_0001 VISTA 11:31730852-32331950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167211 Pax6-201 protein_coding Mus_musculus 0 420
ENSMUST00000156216 Pax6-017 protein_coding Mus_musculus 0 420
ENSMUST00000090391 Pax6-013 protein_coding Mus_musculus 0 420
ENSMUST00000111085 Pax6-008 protein_coding Mus_musculus 0 420
ENSMUST00000111086 Pax6-001 protein_coding Mus_musculus 0 420
ENSMUST00000111082 Pax6-012 protein_coding Mus_musculus 0 331
ENSMUST00000111083 Pax6-009 protein_coding Mus_musculus 0 331
ENSMUST00000090397 Pax6-011 protein_coding Mus_musculus 0 331
ENSMUST00000111087 Pax6-002 protein_coding Mus_musculus 0 331
ENSMUST00000145744 Pax6-022 processed_transcript Mus_musculus 0 320
ENSMUST00000138365 Pax6-021 processed_transcript Mus_musculus 0 320
ENSMUST00000154643 Pax6-014 retained_intron Mus_musculus 0 320
ENSMUST00000140173 Pax6-019 processed_transcript Mus_musculus 0 320
ENSMUST00000155081 Pax6-023 processed_transcript Mus_musculus 0 300
ENSMUST00000135412 Pax6-020 processed_transcript Mus_musculus 0 300
ENSMUST00000153011 Pax6-018 processed_transcript Mus_musculus 0 300
ENSMUST00000146803 Pax6-026 processed_transcript Mus_musculus 0 296
ENSMUST00000123000 Pax6-025 retained_intron Mus_musculus 0 231
ENSMUST00000154302 Pax6-024 retained_intron Mus_musculus 0 231
ENSDART00000066224 pax6a-201 protein_coding Danio_rerio 9.80909e-45 183
ENSDART00000128877 pax6a-203 protein_coding Danio_rerio 9.80909e-45 183
ENSDART00000129319 pax6a-204 protein_coding Danio_rerio 9.80909e-45 183
ENSDART00000124577 pax6a-202 protein_coding Danio_rerio 9.80909e-45 183
ENSDART00000132425 pax6a-006 protein_coding Danio_rerio 9.80909e-45 183
ENSDART00000133390 pax6a-009 protein_coding Danio_rerio 9.80909e-45 183
ENSDART00000139544 pax6a-008 protein_coding Danio_rerio 9.80909e-45 183
ENSDART00000131523 pax6a-005 protein_coding Danio_rerio 9.80909e-45 183
ENSDART00000148420 pax6a-001 protein_coding Danio_rerio 9.80909e-45 183
ENSDART00000066225 pax6a-002 protein_coding Danio_rerio 9.80909e-45 183
ENSMUST00000142772 Pax6-015 protein_coding Mus_musculus 6.00036e-42 174
ENSDART00000014572 pax6b-201 protein_coding Danio_rerio 3e-30 135
ENSDART00000145946 pax6b-001 protein_coding Danio_rerio 3e-30 135

Loading