C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000459899 RP11-561B11.1-001 ENSG00000240023 9606 - 14:35388121-35389069 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryENST00000459899
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary
ENST00000459899 0.138±0.00 0.088±0.00 0.042±0.00 0.019±0.00 0.040±0.00 0.035±0.00 0.037±0.00 0.100±0.00 0.023±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MF CIL_0008MF_0001 VISTA 14:35250818-35851792
CIL_0008ME CIL_0008ME_0001 VISTA 14:35273755-35874460
CIL_0001RJ CIL_0001RJ_0001 CGP 14:35278633-35404749

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086519 Rplp0-001 protein_coding Mus_musculus 0 915
ENSMUST00000180422 Gm9625-001 processed_pseudogene Mus_musculus 0 905
ENSMUST00000076373 Gm8730-201 protein_coding Mus_musculus 0 898
ENSMUST00000122125 Rplp0-ps1-001 processed_pseudogene Mus_musculus 0 813
ENSMUST00000156359 Rplp0-004 protein_coding Mus_musculus 0 695
ENSMUST00000152976 Rplp0-002 protein_coding Mus_musculus 0 459
ENSMUST00000155584 Rplp0-003 retained_intron Mus_musculus 0 342

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