C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 8730
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076373 Gm8730-201 ENSMUSG00000063696 10090 - 8:102864779-102865853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076373
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076373 87.556±41.16 73.258±1.25 1.463±0.67 5.477±4.06 102.693±50.74 107.357±92.71 18.619±13.08 64.591±3.09 23.451±22.43 34.013±29.86 0.129±0.10 143.281±65.44 2.623±4.78 54.413±27.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097S CIL_00097S_0002 VISTA 8:102777237-103378991

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006414 IEA translational elongation
GO:0042254 IEA ribosome biogenesis
GO:0071353 IDA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228306 RPLP0-201 protein_coding Homo_sapiens 0 1389
ENST00000313104 RPLP0-003 protein_coding Homo_sapiens 0 765
ENST00000392514 RPLP0-001 protein_coding Homo_sapiens 0 1391
ENST00000394878 RPLP0P6-001 processed_pseudogene Homo_sapiens 0 1219
ENST00000445179 RP1-140J1.4-001 processed_pseudogene Homo_sapiens 0 815
ENST00000448115 RP11-302I18.1-001 processed_pseudogene Homo_sapiens 0 918
ENST00000459899 RP11-561B11.1-001 processed_pseudogene Homo_sapiens 0 898
ENST00000461635 RP11-436J20.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000471253 RP11-133K1.1-001 processed_pseudogene Homo_sapiens 0 941
ENST00000490750 RPLP0P2-001 transcribed_processed_pseudogene Homo_sapiens 0 1070
ENST00000496593 RPLP0P2-002 processed_transcript Homo_sapiens 0 1192
ENST00000546564 RPLP0-022 retained_intron Homo_sapiens 0 767
ENST00000546989 RPLP0-008 protein_coding Homo_sapiens 0 765
ENST00000546990 RPLP0-025 protein_coding Homo_sapiens 0 531
ENST00000547173 RPLP0-026 nonsense_mediated_decay Homo_sapiens 0 749
ENST00000547191 RPLP0-014 protein_coding Homo_sapiens 0 638
ENST00000547211 RPLP0-019 protein_coding Homo_sapiens 0 881
ENST00000547475 RPLP0-027 nonsense_mediated_decay Homo_sapiens 0 695
ENST00000548495 RPLP0-012 retained_intron Homo_sapiens 0 390
ENST00000548551 RPLP0-011 retained_intron Homo_sapiens 0 518
ENST00000548568 RPLP0-016 retained_intron Homo_sapiens 0 566
ENST00000549098 RPLP0-013 nonsense_mediated_decay Homo_sapiens 0 1339
ENST00000549242 RPLP0-010 retained_intron Homo_sapiens 0 440
ENST00000550296 RPLP0-020 processed_transcript Homo_sapiens 0 749
ENST00000550423 RPLP0-015 protein_coding Homo_sapiens 0 459
ENST00000550856 RPLP0-009 protein_coding Homo_sapiens 0 1072
ENST00000551150 RPLP0-002 protein_coding Homo_sapiens 0 1389
ENST00000551258 RPLP0-024 nonsense_mediated_decay Homo_sapiens 0 1177
ENST00000551336 RPLP0-017 processed_transcript Homo_sapiens 2.94273e-44 182
ENST00000551783 RPLP0-018 retained_intron Homo_sapiens 0 440
ENST00000551914 RPLP0-021 protein_coding Homo_sapiens 0 566
ENST00000552292 RPLP0-006 protein_coding Homo_sapiens 0 409
ENST00000552461 RPLP0-004 retained_intron Homo_sapiens 0 1208
ENST00000552902 RPLP0-023 retained_intron Homo_sapiens 0 767
ENST00000588088 RP11-824M15.3-002 processed_transcript Homo_sapiens 0 512
ENST00000592549 RP11-824M15.3-001 transcribed_processed_pseudogene Homo_sapiens 0 917

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