C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein, large, P0
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156359 Rplp0-004 ENSMUSG00000067274 10090 + 5:115559537-115562555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENSMUST00000156359
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENSMUST00000156359 168.099±52.02 195.708±14.37 21.341±0.00 175.796±34.22 415.205±115.80 100.168±14.84 136.957±0.00 106.327±11.41 383.091±189.93 484.713±294.24 30.007±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005840 IEA ribosome
GO:0042254 IEA ribosome biogenesis
GO:0071353 IDA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228306 RPLP0-201 protein_coding Homo_sapiens 0 1029
ENST00000313104 RPLP0-003 protein_coding Homo_sapiens 0 647
ENST00000392514 RPLP0-001 protein_coding Homo_sapiens 0 1029
ENST00000394878 RPLP0P6-001 processed_pseudogene Homo_sapiens 0 922
ENST00000459899 RP11-561B11.1-001 processed_pseudogene Homo_sapiens 0 695
ENST00000471253 RP11-133K1.1-001 processed_pseudogene Homo_sapiens 0 715
ENST00000490750 RPLP0P2-001 transcribed_processed_pseudogene Homo_sapiens 0 811
ENST00000496593 RPLP0P2-002 processed_transcript Homo_sapiens 0 861
ENST00000498296 RPLP0P11-001 processed_pseudogene Homo_sapiens 0 451
ENST00000546564 RPLP0-022 retained_intron Homo_sapiens 0 649
ENST00000546989 RPLP0-008 protein_coding Homo_sapiens 0 645
ENST00000546990 RPLP0-025 protein_coding Homo_sapiens 0 418
ENST00000547173 RPLP0-026 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000547191 RPLP0-014 protein_coding Homo_sapiens 0 625
ENST00000547211 RPLP0-019 protein_coding Homo_sapiens 0 861
ENST00000547475 RPLP0-027 nonsense_mediated_decay Homo_sapiens 0 577
ENST00000548495 RPLP0-012 retained_intron Homo_sapiens 0 375
ENST00000548551 RPLP0-011 retained_intron Homo_sapiens 0 497
ENST00000548568 RPLP0-016 retained_intron Homo_sapiens 0 453
ENST00000549098 RPLP0-013 nonsense_mediated_decay Homo_sapiens 0 1072
ENST00000549242 RPLP0-010 retained_intron Homo_sapiens 0 333
ENST00000550296 RPLP0-020 processed_transcript Homo_sapiens 0 630
ENST00000550423 RPLP0-015 protein_coding Homo_sapiens 0 451
ENST00000550856 RPLP0-009 protein_coding Homo_sapiens 0 976
ENST00000551150 RPLP0-002 protein_coding Homo_sapiens 0 1029
ENST00000551258 RPLP0-024 nonsense_mediated_decay Homo_sapiens 0 904
ENST00000551336 RPLP0-017 processed_transcript Homo_sapiens 2.94273e-44 182
ENST00000551783 RPLP0-018 retained_intron Homo_sapiens 0 333
ENST00000551914 RPLP0-021 protein_coding Homo_sapiens 0 453
ENST00000552461 RPLP0-004 retained_intron Homo_sapiens 0 955
ENST00000552902 RPLP0-023 retained_intron Homo_sapiens 0 649
ENST00000572768 RP11-429H5.1-001 processed_pseudogene Homo_sapiens 0 457
ENST00000588088 RP11-824M15.3-002 processed_transcript Homo_sapiens 0 403
ENST00000592549 RP11-824M15.3-001 transcribed_processed_pseudogene Homo_sapiens 0 708

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