C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein, large, P0
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086519 Rplp0-001 ENSMUSG00000067274 10090 + 5:115559467-115563727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086519
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086519 569.076±213.49 545.303±19.89 894.121±116.84 542.946±379.45 702.803±295.87 1141.650±96.85 343.531±119.03 525.284±46.35 939.174±699.81 565.451±106.18 291.967±31.70 943.063±430.17 452.500±344.85 514.492±246.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005840 IEA ribosome
GO:0006414 IEA translational elongation
GO:0030529 ISS ribonucleoprotein complex
GO:0042254 IEA ribosome biogenesis
GO:0071353 IDA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228306 RPLP0-201 protein_coding Homo_sapiens 0 1391
ENST00000313104 RPLP0-003 protein_coding Homo_sapiens 0 780
ENST00000392514 RPLP0-001 protein_coding Homo_sapiens 0 1458
ENST00000394878 RPLP0P6-001 processed_pseudogene Homo_sapiens 0 1219
ENST00000448115 RP11-302I18.1-001 processed_pseudogene Homo_sapiens 0 924
ENST00000459899 RP11-561B11.1-001 processed_pseudogene Homo_sapiens 0 915
ENST00000471253 RP11-133K1.1-001 processed_pseudogene Homo_sapiens 0 935
ENST00000490750 RPLP0P2-001 transcribed_processed_pseudogene Homo_sapiens 0 1075
ENST00000496593 RPLP0P2-002 processed_transcript Homo_sapiens 0 1214
ENST00000498296 RPLP0P11-001 processed_pseudogene Homo_sapiens 0 597
ENST00000546564 RPLP0-022 retained_intron Homo_sapiens 0 750
ENST00000546989 RPLP0-008 protein_coding Homo_sapiens 0 780
ENST00000546990 RPLP0-025 protein_coding Homo_sapiens 0 520
ENST00000547173 RPLP0-026 nonsense_mediated_decay Homo_sapiens 0 732
ENST00000547191 RPLP0-014 protein_coding Homo_sapiens 0 621
ENST00000547211 RPLP0-019 protein_coding Homo_sapiens 0 876
ENST00000547475 RPLP0-027 nonsense_mediated_decay Homo_sapiens 0 678
ENST00000548495 RPLP0-012 retained_intron Homo_sapiens 0 416
ENST00000548551 RPLP0-011 retained_intron Homo_sapiens 0 538
ENST00000548568 RPLP0-016 retained_intron Homo_sapiens 0 555
ENST00000549098 RPLP0-013 nonsense_mediated_decay Homo_sapiens 0 1373
ENST00000549242 RPLP0-010 retained_intron Homo_sapiens 0 468
ENST00000550296 RPLP0-020 processed_transcript Homo_sapiens 0 732
ENST00000550423 RPLP0-015 protein_coding Homo_sapiens 0 448
ENST00000550856 RPLP0-009 protein_coding Homo_sapiens 0 1077
ENST00000551150 RPLP0-002 protein_coding Homo_sapiens 0 1397
ENST00000551258 RPLP0-024 nonsense_mediated_decay Homo_sapiens 0 1184
ENST00000551336 RPLP0-017 processed_transcript Homo_sapiens 2.94273e-44 182
ENST00000551783 RPLP0-018 retained_intron Homo_sapiens 0 435
ENST00000551914 RPLP0-021 protein_coding Homo_sapiens 0 555
ENST00000552461 RPLP0-004 retained_intron Homo_sapiens 0 1210
ENST00000552902 RPLP0-023 retained_intron Homo_sapiens 0 750
ENST00000572768 RP11-429H5.1-001 processed_pseudogene Homo_sapiens 0 603
ENST00000588088 RP11-824M15.3-002 processed_transcript Homo_sapiens 0 508
ENST00000592549 RP11-824M15.3-001 transcribed_processed_pseudogene Homo_sapiens 0 922

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