C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing ring finger 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000466780 PDZRN3-004 ENSG00000121440 9606 - 3:73383079-73561618 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENST00000466780
Transcript ID Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000466780 4.303±0.15 1.588±0.00 8.613±0.00 0.218±0.00 6.676±0.00 1.716±0.00 1.097±0.00 23.009±0.00 1.635±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098G CIL_00098G_0001 VISTA 3:73222646-73825117

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075994 Pdzrn3-001 protein_coding Mus_musculus 0 2745
ENSMUST00000124884 Pdzrn3-004 processed_transcript Mus_musculus 0 470
ENSMUST00000035399 Pdzrn4-201 protein_coding Mus_musculus 0 385
ENSMUST00000169942 Pdzrn4-202 protein_coding Mus_musculus 0 385
ENSDART00000114330 pdzrn3b-001 protein_coding Danio_rerio 0 359
ENSMUST00000144505 Pdzrn3-002 retained_intron Mus_musculus 0 315
ENSDART00000004678 PDZD4 (2 of 2)-201 protein_coding Danio_rerio 5e-40 171

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