C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469219 RP11-85G20.1-001 ENSG00000240096 9606 - 14:93223598-93224139 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000469219
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000469219 0.305±0.00 0.271±0.00 0.131±0.00 0.120±0.00 0.162±0.00 0.237±0.00 0.101±0.00 0.240±0.00 0.191±0.07 0.368±0.00 0.346±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MM CIL_0003MM_0001 CGP 14:93202894-93229215
CIL_00061C CIL_00061C_0002 CGP 14:93207056-93333092

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054220 Rpl18a-201 protein_coding Mus_musculus 0 475
ENSMUST00000117288 Gm15427-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000161190 Rpl18a-ps1-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000121555 Rpl18-ps1-001 processed_pseudogene Mus_musculus 0 448
ENSDART00000030215 rpl18a-001 protein_coding Danio_rerio 0 291
ENSDART00000148933 rpl18a-002 nonsense_mediated_decay Danio_rerio 0 231

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