C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469884 RP11-6K23.1-001 ENSG00000243916 9606 + 12:15439527-15440401 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLungMuscleOvaryTestisENST00000469884
Transcript ID Adrenal Breast Colon Kidney Lung Muscle Ovary Testis
ENST00000469884 0.046±0.00 0.025±0.00 0.022±0.00 0.024±0.00 0.022±0.00 0.117±0.00 0.057±0.00 0.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000375 CIL_000375_0001 CGP 12:15107783-15597399
CIL_0005VB CIL_0005VB_0002 CGP 12:15322397-15882329

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 527
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 479
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 479
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000117930 Gm13094-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 398
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 2e-20 104
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 0.000000000003 77

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