C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000141100 rps2-002 ENSDARG00000077291 7955 + 3:18127816-18129633 protein_coding

Danio rerio EnsemblZv9

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W5 CIL_0001W5_0001 CGP 3:18127816-18139908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 8.99634e-43 178
ENST00000343262 RPS2-001 protein_coding Homo_sapiens 0 244
ENST00000397318 RPS2P55-001 processed_pseudogene Homo_sapiens 0 233
ENST00000400984 RP11-122G18.7-001 processed_pseudogene Homo_sapiens 3e-32 143
ENST00000402069 RP3-337H4.6-001 processed_pseudogene Homo_sapiens 0 222
ENST00000413412 RP4-730K3.3-001 transcribed_processed_pseudogene Homo_sapiens 0.0000000001 71
ENST00000423464 RP11-183G22.1-001 processed_pseudogene Homo_sapiens 8.99634e-43 178
ENST00000433054 RP11-1O7.1-001 processed_pseudogene Homo_sapiens 1e-26 124
ENST00000438210 RP3-342P20.2-001 processed_pseudogene Homo_sapiens 0 198
ENST00000443417 RPS2P35-001 processed_pseudogene Homo_sapiens 2e-40 171
ENST00000445918 RP11-388B24.4-001 processed_pseudogene Homo_sapiens 2e-39 167
ENST00000447334 RPS2P7-001 processed_pseudogene Homo_sapiens 0 239
ENST00000447420 RP4-803A2.2-001 unprocessed_pseudogene Homo_sapiens 9e-28 128
ENST00000449856 AC022210.2-001 processed_pseudogene Homo_sapiens 0 228
ENST00000458332 RPS2P46-001 processed_pseudogene Homo_sapiens 0 233
ENST00000459634 RP11-192C21.1-001 processed_pseudogene Homo_sapiens 1e-25 121
ENST00000468126 RP11-324J13.1-001 processed_pseudogene Homo_sapiens 3e-33 147
ENST00000469884 RP11-6K23.1-001 processed_pseudogene Homo_sapiens 2e-20 104
ENST00000475555 RP11-364L4.1-001 processed_pseudogene Homo_sapiens 1.96182e-44 183
ENST00000476944 RPS2P4-001 processed_pseudogene Homo_sapiens 0 228
ENST00000479476 RPS2P6-001 processed_pseudogene Homo_sapiens 7e-39 165
ENST00000480705 RP11-296A18.5-001 processed_pseudogene Homo_sapiens 0 228
ENST00000488803 RPS2P5-001 processed_pseudogene Homo_sapiens 0 239
ENST00000488906 RP5-867C24.1-001 processed_pseudogene Homo_sapiens 6e-39 165
ENST00000491725 RP11-810P12.1-001 processed_pseudogene Homo_sapiens 4.00001e-41 172
ENST00000492365 KB-1683C8.1-001 processed_pseudogene Homo_sapiens 2e-29 134
ENST00000494084 CTD-2013N17.1-001 processed_pseudogene Homo_sapiens 1.4013e-45 187
ENST00000494359 RP11-452G18.2-001 processed_pseudogene Homo_sapiens 0 189
ENST00000526522 RPS2-006 protein_coding Homo_sapiens 0 244
ENST00000526908 RPS2-010 retained_intron Homo_sapiens 5e-39 165
ENST00000527109 RPS2-005 retained_intron Homo_sapiens 0 244
ENST00000527302 RPS2-007 protein_coding Homo_sapiens 0 244
ENST00000527826 RPS2-009 retained_intron Homo_sapiens 7e-39 165
ENST00000527871 RPS2-004 retained_intron Homo_sapiens 0 244
ENST00000530225 RPS2-017 protein_coding Homo_sapiens 0 244
ENST00000531065 RPS2-003 retained_intron Homo_sapiens 4e-38 163
ENST00000532746 RPS2-012 nonsense_mediated_decay Homo_sapiens 0.00000000000008 82
ENST00000533161 RPS2-002 retained_intron Homo_sapiens 0 244
ENST00000533186 RPS2-013 protein_coding Homo_sapiens 0.0000000000006 79
ENST00000533872 RPS2-011 retained_intron Homo_sapiens 0 244
ENST00000534461 RPS2-014 retained_intron Homo_sapiens 7e-38 161
ENST00000563194 RPS2-018 protein_coding Homo_sapiens 6e-23 110
ENST00000610837 RP11-19G24.1-001 processed_pseudogene Homo_sapiens 2e-29 134
ENST00000612648 CTB-75G16.1-001 processed_pseudogene Homo_sapiens 8.99634e-43 178

Loading