C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000133878 rps2-003 ENSDARG00000077291 7955 + 3:18128257-18128783 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENSDART00000133878
Transcript ID Kidney
ENSDART00000133878 9.413±4.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W5 CIL_0001W5_0001 CGP 3:18127816-18139908

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 6e-25 119
ENST00000343262 RPS2-001 protein_coding Homo_sapiens 3e-38 163
ENST00000397318 RPS2P55-001 processed_pseudogene Homo_sapiens 1e-36 158
ENST00000400984 RP11-122G18.7-001 processed_pseudogene Homo_sapiens 1e-16 92
ENST00000402069 RP3-337H4.6-001 processed_pseudogene Homo_sapiens 3e-33 147
ENST00000413412 RP4-730K3.3-001 transcribed_processed_pseudogene Homo_sapiens 0.0000000001 71
ENST00000423464 RP11-183G22.1-001 processed_pseudogene Homo_sapiens 1e-26 124
ENST00000433054 RP11-1O7.1-001 processed_pseudogene Homo_sapiens 7e-19 99
ENST00000438210 RP3-342P20.2-001 processed_pseudogene Homo_sapiens 2e-24 117
ENST00000443417 RPS2P35-001 processed_pseudogene Homo_sapiens 2e-25 121
ENST00000445918 RP11-388B24.4-001 processed_pseudogene Homo_sapiens 1e-16 92
ENST00000447334 RPS2P7-001 processed_pseudogene Homo_sapiens 5e-35 152
ENST00000447420 RP4-803A2.2-001 unprocessed_pseudogene Homo_sapiens 0.00000000000007 82
ENST00000449856 AC022210.2-001 processed_pseudogene Homo_sapiens 6e-34 148
ENST00000458332 RPS2P46-001 processed_pseudogene Homo_sapiens 5e-35 152
ENST00000459634 RP11-192C21.1-001 processed_pseudogene Homo_sapiens 0.00000000003 73
ENST00000468126 RP11-324J13.1-001 processed_pseudogene Homo_sapiens 6e-25 119
ENST00000469884 RP11-6K23.1-001 processed_pseudogene Homo_sapiens 0.000000000003 77
ENST00000475555 RP11-364L4.1-001 processed_pseudogene Homo_sapiens 1e-21 108
ENST00000476944 RPS2P4-001 processed_pseudogene Homo_sapiens 5e-35 152
ENST00000479476 RPS2P6-001 processed_pseudogene Homo_sapiens 1e-16 92
ENST00000480705 RP11-296A18.5-001 processed_pseudogene Homo_sapiens 1e-36 158
ENST00000488803 RPS2P5-001 processed_pseudogene Homo_sapiens 2e-38 163
ENST00000488906 RP5-867C24.1-001 processed_pseudogene Homo_sapiens 1e-21 108
ENST00000491725 RP11-810P12.1-001 processed_pseudogene Homo_sapiens 1e-21 108
ENST00000492365 KB-1683C8.1-001 processed_pseudogene Homo_sapiens 0.0000000002 71
ENST00000494084 CTD-2013N17.1-001 processed_pseudogene Homo_sapiens 3e-23 113
ENST00000494359 RP11-452G18.2-001 processed_pseudogene Homo_sapiens 5e-25 119
ENST00000526522 RPS2-006 protein_coding Homo_sapiens 3e-38 163
ENST00000526908 RPS2-010 retained_intron Homo_sapiens 0.00000000000001 84
ENST00000527109 RPS2-005 retained_intron Homo_sapiens 3e-38 163
ENST00000527302 RPS2-007 protein_coding Homo_sapiens 2e-38 163
ENST00000527826 RPS2-009 retained_intron Homo_sapiens 0.00000000000002 84
ENST00000527871 RPS2-004 retained_intron Homo_sapiens 4e-38 163
ENST00000530225 RPS2-017 protein_coding Homo_sapiens 2e-38 163
ENST00000531065 RPS2-003 retained_intron Homo_sapiens 3e-39 167
ENST00000532746 RPS2-012 nonsense_mediated_decay Homo_sapiens 0.00000000000008 82
ENST00000533161 RPS2-002 retained_intron Homo_sapiens 3e-38 163
ENST00000533186 RPS2-013 protein_coding Homo_sapiens 0.0000000000002 81
ENST00000533872 RPS2-011 retained_intron Homo_sapiens 3e-38 163
ENST00000534461 RPS2-014 retained_intron Homo_sapiens 0.0000000000002 81
ENST00000563194 RPS2-018 protein_coding Homo_sapiens 0.00000000000004 81
ENST00000610837 RP11-19G24.1-001 processed_pseudogene Homo_sapiens 0.000000000000005 86
ENST00000612648 CTB-75G16.1-001 processed_pseudogene Homo_sapiens 1e-21 108

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