C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: cyclin L1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000470121 CCNL1-005 ENSG00000163660 9606 - 3:157148241-157160094 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000470121
Transcript ID Brain Testis
ENST00000470121 3.019±0.00 2.985±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028X CIL_00028X_0001 CGP 3:156825481-157160760
CIL_00081H CIL_00081H_0001 VISTA 3:156827989-157431369
CIL_00028W CIL_00028W_0001 CGP 3:157146508-157533619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 IEA RNA processing
GO:0019901 IEA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000142153 Ccnl1-005 retained_intron Mus_musculus 0 1317
ENSMUST00000135719 Ccnl1-003 nonsense_mediated_decay Mus_musculus 0 1317
ENSMUST00000029416 Ccnl1-001 protein_coding Mus_musculus 0 1317
ENSMUST00000129002 Ccnl1-002 nonsense_mediated_decay Mus_musculus 0 1317
ENSMUST00000154585 Ccnl1-007 nonsense_mediated_decay Mus_musculus 0 1315
ENSMUST00000149160 Ccnl1-006 retained_intron Mus_musculus 0 837
ENSMUST00000122919 Ccnl1-004 retained_intron Mus_musculus 0 813
ENSMUST00000145186 Ccnl1-010 nonsense_mediated_decay Mus_musculus 0 673
ENSMUST00000144810 Ccnl1-009 nonsense_mediated_decay Mus_musculus 0 595
ENSMUST00000149729 Ccnl1-014 retained_intron Mus_musculus 0 363
ENSMUST00000132998 Ccnl1-012 retained_intron Mus_musculus 0 327
ENSMUST00000150304 Ccnl1-013 retained_intron Mus_musculus 0 287
ENSMUST00000148623 Ccnl1-008 retained_intron Mus_musculus 0 283
ENSMUST00000146284 Ccnl1-011 retained_intron Mus_musculus 0 217

Loading