C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471253 RP11-133K1.1-001 ENSG00000244705 9606 - 15:40312352-40313289 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonKidneyLiverLungMuscleOvaryENST00000471253
Transcript ID Adipose Adrenal Colon Kidney Liver Lung Muscle Ovary
ENST00000471253 0.073±0.00 0.098±0.00 0.037±0.00 0.040±0.00 0.086±0.00 0.111±0.00 0.049±0.00 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W0 CIL_0008W0_0001 VISTA 15:39791359-40393937

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180422 Gm9625-001 processed_pseudogene Mus_musculus 0 948
ENSMUST00000076373 Gm8730-201 protein_coding Mus_musculus 0 941
ENSMUST00000086519 Rplp0-001 protein_coding Mus_musculus 0 935
ENSMUST00000121456 Gm14165-001 processed_pseudogene Mus_musculus 0 922
ENSMUST00000122125 Rplp0-ps1-001 processed_pseudogene Mus_musculus 0 808
ENSMUST00000156359 Rplp0-004 protein_coding Mus_musculus 0 715
ENSMUST00000145890 Gucd1-002 nonsense_mediated_decay Mus_musculus 0 669
ENSDART00000073462 rplp0-001 protein_coding Danio_rerio 0 505
ENSMUST00000152976 Rplp0-002 protein_coding Mus_musculus 0 494
ENSMUST00000155584 Rplp0-003 retained_intron Mus_musculus 0 377
ENSDART00000150163 rplp0-002 protein_coding Danio_rerio 0 351

Loading