C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471982 RP11-1085N6.1-001 ENSG00000242995 9606 - 14:56683421-56683741 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastMuscleENST00000471982
Transcript ID Adipose Adrenal Brain Breast Muscle
ENST00000471982 0.051±0.00 0.164±0.00 0.056±0.00 0.111±0.00 0.050±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000602 CIL_000602_0002 CGP 14:56488354-56810479
CIL_0007P7 CIL_0007P7_0001 UCNEbase 14:56513836-57292417
CIL_00083W CIL_00083W_0001 VISTA 14:56553946-57157601
CIL_000869 CIL_000869_0001 VISTA 14:56652290-57254727
CIL_0009BX CIL_0009BX_0001 VISTA 14:56664169-57265628

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 394
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 390
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 387
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 383
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 372
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000174479 Dtnb-005 protein_coding Mus_musculus 0 311
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 0 202
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 1.96182e-44 182

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