C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin L1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000474539 CCNL1-007 ENSG00000163660 9606 - 3:157147796-157153828 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000474539
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000474539 2.000±0.00 4.293±0.00 2.502±0.00 2.227±0.32 5.587±2.02 6.022±0.00 0.937±0.00 3.350±0.00 0.846±0.00 7.923±4.20 1.597±0.00 4.583±1.29 0.723±0.00 0.616±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028X CIL_00028X_0001 CGP 3:156825481-157160760
CIL_00081H CIL_00081H_0001 VISTA 3:156827989-157431369
CIL_00028W CIL_00028W_0001 CGP 3:157146508-157533619

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029416 Ccnl1-001 protein_coding Mus_musculus 0 1855
ENSMUST00000129002 Ccnl1-002 nonsense_mediated_decay Mus_musculus 0 1855
ENSMUST00000154585 Ccnl1-007 nonsense_mediated_decay Mus_musculus 0 1853
ENSMUST00000135719 Ccnl1-003 nonsense_mediated_decay Mus_musculus 0 1786
ENSMUST00000142153 Ccnl1-005 retained_intron Mus_musculus 0 1461
ENSMUST00000122919 Ccnl1-004 retained_intron Mus_musculus 0 1351
ENSMUST00000149160 Ccnl1-006 retained_intron Mus_musculus 0 933
ENSMUST00000144810 Ccnl1-009 nonsense_mediated_decay Mus_musculus 0 595
ENSMUST00000132998 Ccnl1-012 retained_intron Mus_musculus 0 508
ENSMUST00000145186 Ccnl1-010 nonsense_mediated_decay Mus_musculus 0 451
ENSMUST00000149729 Ccnl1-014 retained_intron Mus_musculus 0 363
ENSMUST00000150304 Ccnl1-013 retained_intron Mus_musculus 0 287
ENSMUST00000146284 Ccnl1-011 retained_intron Mus_musculus 0 270
ENSMUST00000148623 Ccnl1-008 retained_intron Mus_musculus 0 213

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