C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin L1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475298 CCNL1-003 ENSG00000163660 9606 - 3:157147796-157160155 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000475298
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000475298 5.265±0.00 11.992±0.00 3.299±0.00 6.276±0.00 4.178±0.00 2.761±0.00 9.201±0.00 6.196±0.00 18.055±0.00 4.398±0.00 24.764±0.00 3.840±0.23 4.126±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028X CIL_00028X_0001 CGP 3:156825481-157160760
CIL_00081H CIL_00081H_0001 VISTA 3:156827989-157431369
CIL_00028W CIL_00028W_0001 CGP 3:157146508-157533619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 IEA RNA processing
GO:0019901 IEA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000154585 Ccnl1-007 nonsense_mediated_decay Mus_musculus 0 3284
ENSMUST00000029416 Ccnl1-001 protein_coding Mus_musculus 0 1853
ENSMUST00000129002 Ccnl1-002 nonsense_mediated_decay Mus_musculus 0 1853
ENSMUST00000135719 Ccnl1-003 nonsense_mediated_decay Mus_musculus 0 1784
ENSMUST00000142153 Ccnl1-005 retained_intron Mus_musculus 0 1356
ENSMUST00000122919 Ccnl1-004 retained_intron Mus_musculus 0 1351
ENSMUST00000145186 Ccnl1-010 nonsense_mediated_decay Mus_musculus 0 878
ENSMUST00000148623 Ccnl1-008 retained_intron Mus_musculus 0 630
ENSMUST00000149160 Ccnl1-006 retained_intron Mus_musculus 0 625
ENSMUST00000144810 Ccnl1-009 nonsense_mediated_decay Mus_musculus 0 593
ENSMUST00000149729 Ccnl1-014 retained_intron Mus_musculus 0 363
ENSMUST00000132998 Ccnl1-012 retained_intron Mus_musculus 0 324
ENSMUST00000150304 Ccnl1-013 retained_intron Mus_musculus 0 285
ENSMUST00000146284 Ccnl1-011 retained_intron Mus_musculus 0 213

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