C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2 pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476944 RPS2P4-001 ENSG00000196183 9606 - 14:104835997-104836852 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000476944
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000476944 0.143±0.00 0.123±0.00 0.072±0.00 0.136±0.00 0.121±0.00 0.056±0.00 0.032±0.00 0.111±0.00 0.031±0.00 0.368±0.00 0.105±0.03 0.100±0.00 0.100±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006NH CIL_0006NH_0001 CGP 14:104800596-104896770

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 0 885
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 839
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 701
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 701
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 689
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000122465 Gm12152-001 processed_pseudogene Mus_musculus 0 326
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 0 228
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 5e-35 152

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