C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478813 RP11-941H19.1-001 ENSG00000241746 9606 - 8:80265528-80266155 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000478813
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000478813 0.283±0.00 0.855±0.00 0.173±0.00 0.919±0.00 0.498±0.00 0.149±0.00 0.083±0.00 0.446±0.00 0.670±0.00 0.592±0.00 0.196±0.02 0.064±0.00 0.459±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NG CIL_0001NG_0001 CGP 8:80034868-80526265

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150350 Rpl13a-001 protein_coding Mus_musculus 0 520
ENSMUST00000124300 Rpl13a-011 protein_coding Mus_musculus 0 512
ENSMUST00000117851 Gm11478-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000102669 Rpl13a-009 nonsense_mediated_decay Mus_musculus 0 457
ENSMUST00000125074 Rpl13a-006 processed_transcript Mus_musculus 0 446
ENSMUST00000071866 Rpl13a-ps1-201 protein_coding Mus_musculus 0 414
ENSMUST00000187187 RP23-19M11.4-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000142239 Rpl13a-010 processed_transcript Mus_musculus 0 226
ENSMUST00000138887 Rpl13a-007 retained_intron Mus_musculus 6e-38 161
ENSMUST00000152970 Rpl13a-003 retained_intron Mus_musculus 4e-20 102

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