C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102669 Rpl13a-009 ENSMUSG00000074129 10090 - 7:45125922-45128720 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102669
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102669 252.308±70.72 142.105±0.00 316.784±36.08 99.046±17.16 332.707±168.37 131.670±34.80 69.906±15.99 98.824±23.13 202.331±169.85 259.296±78.17 107.273±19.29 209.719±77.93 155.682±37.63 59.825±5.15

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0015934 IEA large ribosomal subunit
GO:0030529 ISO ribonucleoprotein complex
GO:0032496 IMP response to lipopolysaccharide
GO:0032844 IMP regulation of homeostatic process
GO:0048246 IMP macrophage chemotaxis
GO:0060425 IMP lung morphogenesis
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391857 RPL13A-001 protein_coding Homo_sapiens 0 706
ENST00000430133 RPL13AP6-001 processed_pseudogene Homo_sapiens 0 575
ENST00000439189 RPL13AP5-001 processed_pseudogene Homo_sapiens 0 664
ENST00000467825 RPL13A-009 protein_coding Homo_sapiens 0 588
ENST00000472481 RPL13A-007 retained_intron Homo_sapiens 0 433
ENST00000476268 RPL13A-003 retained_intron Homo_sapiens 1e-23 115
ENST00000477613 RPL13A-008 processed_transcript Homo_sapiens 0 603
ENST00000478813 RP11-941H19.1-001 processed_pseudogene Homo_sapiens 0 457
ENST00000479992 RPL13A-006 retained_intron Homo_sapiens 0 219
ENST00000484279 RPL13A-004 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000486930 RPL13A-005 retained_intron Homo_sapiens 0 316
ENST00000487479 RPL13AP3-001 transcribed_processed_pseudogene Homo_sapiens 0 549
ENST00000488946 RPL13A-002 retained_intron Homo_sapiens 2e-23 115
ENST00000494676 RPL13AP3-002 processed_transcript Homo_sapiens 0 505
ENST00000495623 RP11-627K11.1-001 processed_pseudogene Homo_sapiens 0 614
ENST00000534211 RP11-140L24.3-001 processed_pseudogene Homo_sapiens 0 329
ENST00000624069 RPL13A-013 nonsense_mediated_decay Homo_sapiens 0 647

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