C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124300 Rpl13a-011 ENSMUSG00000074129 10090 - 7:45125922-45136231 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005125 IEA cytokine activity
GO:0006412 IEA translation
GO:0015934 IEA large ribosomal subunit
GO:0016020 IEA membrane
GO:0030529 ISO ribonucleoprotein complex
GO:0032496 IMP response to lipopolysaccharide
GO:0032844 IMP regulation of homeostatic process
GO:0048246 IMP macrophage chemotaxis
GO:0060425 IMP lung morphogenesis
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000204637 FLT3LG-002 protein_coding Homo_sapiens 0 331
ENST00000391857 RPL13A-001 protein_coding Homo_sapiens 0 737
ENST00000430133 RPL13AP6-001 processed_pseudogene Homo_sapiens 0 623
ENST00000439189 RPL13AP5-001 processed_pseudogene Homo_sapiens 0 706
ENST00000467825 RPL13A-009 protein_coding Homo_sapiens 0 638
ENST00000472481 RPL13A-007 retained_intron Homo_sapiens 0 401
ENST00000476268 RPL13A-003 retained_intron Homo_sapiens 1e-23 115
ENST00000477613 RPL13A-008 processed_transcript Homo_sapiens 0 665
ENST00000478813 RP11-941H19.1-001 processed_pseudogene Homo_sapiens 0 512
ENST00000479992 RPL13A-006 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000484279 RPL13A-004 nonsense_mediated_decay Homo_sapiens 0 627
ENST00000486930 RPL13A-005 retained_intron Homo_sapiens 0 316
ENST00000487479 RPL13AP3-001 transcribed_processed_pseudogene Homo_sapiens 0 586
ENST00000488946 RPL13A-002 retained_intron Homo_sapiens 2e-23 115
ENST00000494676 RPL13AP3-002 processed_transcript Homo_sapiens 0 556
ENST00000495623 RP11-627K11.1-001 processed_pseudogene Homo_sapiens 0 665
ENST00000534211 RP11-140L24.3-001 processed_pseudogene Homo_sapiens 0 392
ENST00000593422 FLT3LG-013 retained_intron Homo_sapiens 0 228
ENST00000594009 FLT3LG-007 protein_coding Homo_sapiens 0 368
ENST00000595510 FLT3LG-008 protein_coding Homo_sapiens 0 331
ENST00000596435 FLT3LG-010 protein_coding Homo_sapiens 0 224
ENST00000597551 FLT3LG-001 protein_coding Homo_sapiens 0 361
ENST00000599536 CTD-3148I10.9-001 nonsense_mediated_decay Homo_sapiens 0.000000000000004 86
ENST00000600084 FLT3LG-004 nonsense_mediated_decay Homo_sapiens 3e-18 97
ENST00000600429 FLT3LG-005 protein_coding Homo_sapiens 0 361
ENST00000601800 FLT3LG-009 nonsense_mediated_decay Homo_sapiens 3e-18 97
ENST00000624069 RPL13A-013 nonsense_mediated_decay Homo_sapiens 0 678

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