C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125074 Rpl13a-006 ENSMUSG00000074129 10090 - 7:45126003-45128735 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125074
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125074 213.381±43.72 269.318±92.06 221.950±0.11 155.680±17.61 377.055±54.21 156.617±43.89 86.954±17.73 144.403±33.79 142.841±85.90 211.704±51.81 126.018±20.59 196.174±41.66 163.826±21.80 69.555±3.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391857 RPL13A-001 protein_coding Homo_sapiens 0 641
ENST00000430133 RPL13AP6-001 processed_pseudogene Homo_sapiens 0 562
ENST00000439189 RPL13AP5-001 processed_pseudogene Homo_sapiens 0 636
ENST00000467825 RPL13A-009 protein_coding Homo_sapiens 0 542
ENST00000472481 RPL13A-007 retained_intron Homo_sapiens 0 403
ENST00000476268 RPL13A-003 retained_intron Homo_sapiens 1e-23 115
ENST00000477613 RPL13A-008 processed_transcript Homo_sapiens 0 568
ENST00000478813 RP11-941H19.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000479992 RPL13A-006 retained_intron Homo_sapiens 0 189
ENST00000484279 RPL13A-004 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000486930 RPL13A-005 retained_intron Homo_sapiens 0 316
ENST00000487479 RPL13AP3-001 transcribed_processed_pseudogene Homo_sapiens 0 534
ENST00000488946 RPL13A-002 retained_intron Homo_sapiens 2e-23 115
ENST00000494676 RPL13AP3-002 processed_transcript Homo_sapiens 0 483
ENST00000495623 RP11-627K11.1-001 processed_pseudogene Homo_sapiens 0 606
ENST00000534211 RP11-140L24.3-001 processed_pseudogene Homo_sapiens 0 327
ENST00000624069 RPL13A-013 nonsense_mediated_decay Homo_sapiens 0 582

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