C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11478
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117851 Gm11478-001 ENSMUSG00000083992 10090 - 11:86630428-86631026 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117851
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117851 0.320±0.13 2.756±1.20 0.960±0.76 0.314±0.08 0.418±0.32 0.772±0.37 0.504±0.39 1.729±0.74 0.908±0.52 0.511±0.10 0.142±0.08 0.639±0.41 0.722±0.52 0.688±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391857 RPL13A-001 protein_coding Homo_sapiens 0 673
ENST00000439189 RPL13AP5-001 processed_pseudogene Homo_sapiens 0 673
ENST00000467825 RPL13A-009 protein_coding Homo_sapiens 0 573
ENST00000472481 RPL13A-007 retained_intron Homo_sapiens 0 363
ENST00000476268 RPL13A-003 retained_intron Homo_sapiens 1e-18 99
ENST00000477613 RPL13A-008 processed_transcript Homo_sapiens 0 610
ENST00000478813 RP11-941H19.1-001 processed_pseudogene Homo_sapiens 0 470
ENST00000479992 RPL13A-006 retained_intron Homo_sapiens 9e-38 161
ENST00000484279 RPL13A-004 nonsense_mediated_decay Homo_sapiens 0 601
ENST00000486930 RPL13A-005 retained_intron Homo_sapiens 0 287
ENST00000487479 RPL13AP3-001 transcribed_processed_pseudogene Homo_sapiens 0 553
ENST00000488946 RPL13A-002 retained_intron Homo_sapiens 2e-18 99
ENST00000494676 RPL13AP3-002 processed_transcript Homo_sapiens 0 505
ENST00000534211 RP11-140L24.3-001 processed_pseudogene Homo_sapiens 0 403
ENST00000624069 RPL13A-013 nonsense_mediated_decay Homo_sapiens 0 619

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