C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing ring finger 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479530 PDZRN3-006 ENSG00000121440 9606 - 3:73383136-73433904 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonLiverLungTestisENST00000479530
Transcript ID Adipose Adrenal Bladder Breast Colon Liver Lung Testis
ENST00000479530 5.070±0.00 6.622±0.00 0.662±0.00 8.829±0.00 13.371±0.00 0.074±0.00 0.570±0.00 5.234±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098G CIL_00098G_0001 VISTA 3:73222646-73825117

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075994 Pdzrn3-001 protein_coding Mus_musculus 0 2686
ENSMUST00000144505 Pdzrn3-002 retained_intron Mus_musculus 0 496
ENSMUST00000124884 Pdzrn3-004 processed_transcript Mus_musculus 0 472
ENSMUST00000035399 Pdzrn4-201 protein_coding Mus_musculus 0 385
ENSMUST00000169942 Pdzrn4-202 protein_coding Mus_musculus 0 385
ENSDART00000114330 pdzrn3b-001 protein_coding Danio_rerio 0 359
ENSDART00000004678 PDZD4 (2 of 2)-201 protein_coding Danio_rerio 5e-40 171

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