C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480171 PKP4-006 ENSG00000144283 9606 + 2:158662242-158681426 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastLiverLungOvaryENST00000480171
Transcript ID Adrenal Bladder Breast Liver Lung Ovary
ENST00000480171 3.992±0.00 6.467±0.00 3.399±0.93 1.762±0.00 2.927±0.00 4.790±1.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0001 CGP 2:158456964-158862958

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151452 Pkp4-013 processed_transcript Mus_musculus 0 2410
ENSMUST00000112577 Pkp4-010 protein_coding Mus_musculus 0 2410
ENSMUST00000102754 Pkp4-001 protein_coding Mus_musculus 0 2410
ENSMUST00000183359 Pkp4-003 nonsense_mediated_decay Mus_musculus 0 2113
ENSMUST00000168631 Pkp4-201 protein_coding Mus_musculus 0 1158
ENSMUST00000037903 Pkp4-004 protein_coding Mus_musculus 0 1158
ENSMUST00000124127 Pkp4-012 processed_transcript Mus_musculus 0 612
ENSMUST00000184332 Pkp4-005 nonsense_mediated_decay Mus_musculus 0 196
ENSMUST00000123908 Pkp4-002 protein_coding Mus_musculus 0 191

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