C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 29
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000483112 NPM1P29-001 ENSG00000239351 9606 - 3:149938997-149939799 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000483112
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000483112 0.054±0.00 0.171±0.00 0.296±0.00 0.063±0.03 0.303±0.19 0.150±0.14 0.096±0.00 0.141±0.00 0.139±0.09 0.132±0.00 0.366±0.00 0.226±0.23 1.177±1.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002R7 CIL_0002R7_0001 CGP 3:149738470-149968385
CIL_0002R6 CIL_0002R6_0001 CGP 3:149761105-149968385
CIL_0002R5 CIL_0002R5_0001 CGP 3:149812708-150050788

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 699
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 699
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 699
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 569
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 503
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 272
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 542

Loading