C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Meis homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488550 MEIS1-002 ENSG00000143995 9606 + 2:66435558-66572454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000488550
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000488550 0.276±0.00 0.703±0.00 1.230±0.00 0.518±0.11 1.948±1.34 1.867±0.18 0.639±0.00 4.734±0.00 1.976±1.24 0.170±0.00 2.888±1.94 0.468±0.18 0.745±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ET CIL_0008ET_0001 VISTA 2:65870410-66471811
CIL_00085V CIL_00085V_0001 VISTA 2:65983424-66584663
CIL_0007JR CIL_0007JR_0003 UCNEbase 2:66138106-68180953
CIL_0008VO CIL_0008VO_0001 VISTA 2:66222407-66823799
CIL_000949 CIL_000949_0001 VISTA 2:66235383-66837956
CIL_00094L CIL_00094L_0001 VISTA 2:66397571-66998983

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177417 Meis1-008 protein_coding Mus_musculus 0 4868
ENSMUST00000144988 Meis1-005 protein_coding Mus_musculus 0 2760
ENSMUST00000185131 Meis1-201 protein_coding Mus_musculus 0 2220
ENSMUST00000068264 Meis1-001 protein_coding Mus_musculus 0 2220
ENSMUST00000102878 Meis1-004 nonsense_mediated_decay Mus_musculus 0 2202
ENSMUST00000118661 Meis1-006 processed_transcript Mus_musculus 0 1210
ENSMUST00000177357 Meis1-007 nonsense_mediated_decay Mus_musculus 0 1125
ENSDART00000102576 meis1-001 protein_coding Danio_rerio 0 981
ENSMUST00000137300 Meis1-003 retained_intron Mus_musculus 0 760
ENSMUST00000125722 Meis1-002 retained_intron Mus_musculus 0 760
ENSDART00000140215 meis1-002 retained_intron Danio_rerio 0 399
ENSMUST00000118654 Meis2-002 retained_intron Mus_musculus 5e-27 128
ENSMUST00000151279 Meis2-010 processed_transcript Mus_musculus 1e-23 117
ENSMUST00000120995 Meis2-003 processed_transcript Mus_musculus 1e-23 117
ENSMUST00000074285 Meis2-014 protein_coding Mus_musculus 1e-23 117
ENSMUST00000110906 Meis2-006 protein_coding Mus_musculus 1e-23 117
ENSMUST00000110908 Meis2-013 protein_coding Mus_musculus 1e-23 117
ENSMUST00000110907 Meis2-001 protein_coding Mus_musculus 1e-23 117

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