C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Meis homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102878 Meis1-004 ENSMUSG00000020160 10090 - 11:18880428-19018714 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverOvaryENSMUST00000102878
Transcript ID Adrenal Breast Colon Liver Ovary
ENSMUST00000102878 6.838±0.75 1.341±0.11 1.208±0.22 0.454±0.00 4.107±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JR CIL_0007JR_0004 UCNEbase 11:17198316-19679637
CIL_0007XO CIL_0007XO_0002 VISTA 11:18304266-18905268
CIL_00094L CIL_00094L_0002 VISTA 11:18449398-19050623
CIL_000949 CIL_000949_0002 VISTA 11:18616164-19218730
CIL_0008VO CIL_0008VO_0002 VISTA 11:18629400-19230770
CIL_00085V CIL_00085V_0002 VISTA 11:18859805-19461021

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000102576 meis1-001 protein_coding Danio_rerio 0 889
ENSDART00000140215 meis1-002 retained_intron Danio_rerio 0 359
ENST00000272369 MEIS1-001 protein_coding Homo_sapiens 0 2451
ENST00000398506 MEIS1-003 protein_coding Homo_sapiens 0 3035
ENST00000409517 MEIS1-013 processed_transcript Homo_sapiens 0 1210
ENST00000409622 MEIS1-010 processed_transcript Homo_sapiens 0 512
ENST00000437869 MEIS1-006 protein_coding Homo_sapiens 0 514
ENST00000450027 MEIS1-014 processed_transcript Homo_sapiens 0 582
ENST00000466811 MEIS1-011 processed_transcript Homo_sapiens 0 344
ENST00000475239 MEIS1-012 processed_transcript Homo_sapiens 0 652
ENST00000488550 MEIS1-002 protein_coding Homo_sapiens 0 2202
ENST00000490726 MEIS1-005 processed_transcript Homo_sapiens 0 773
ENST00000491706 MEIS1-008 retained_intron Homo_sapiens 0 1037
ENST00000495021 MEIS1-016 protein_coding Homo_sapiens 0 1447
ENST00000496248 MEIS1-009 processed_transcript Homo_sapiens 0 616
ENST00000498705 MEIS1-007 retained_intron Homo_sapiens 0 697
ENST00000542964 MEIS1-015 processed_transcript Homo_sapiens 0 601
ENST00000560281 MEIS1-019 protein_coding Homo_sapiens 0 2398
ENST00000606455 MEIS1-018 processed_transcript Homo_sapiens 0 702

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