C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Meis homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177357 Meis1-007 ENSMUSG00000020160 10090 - 11:18881360-19016289 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000177357
Transcript ID Muscle
ENSMUST00000177357 0.352±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JR CIL_0007JR_0004 UCNEbase 11:17198316-19679637
CIL_0007XO CIL_0007XO_0002 VISTA 11:18304266-18905268
CIL_00094L CIL_00094L_0002 VISTA 11:18449398-19050623
CIL_000949 CIL_000949_0002 VISTA 11:18616164-19218730
CIL_0008VO CIL_0008VO_0002 VISTA 11:18629400-19230770
CIL_00085V CIL_00085V_0002 VISTA 11:18859805-19461021

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000102576 meis1-001 protein_coding Danio_rerio 0 518
ENSDART00000140215 meis1-002 retained_intron Danio_rerio 0 246
ENST00000272369 MEIS1-001 protein_coding Homo_sapiens 0 1125
ENST00000398506 MEIS1-003 protein_coding Homo_sapiens 0 1125
ENST00000409517 MEIS1-013 processed_transcript Homo_sapiens 0 833
ENST00000409622 MEIS1-010 processed_transcript Homo_sapiens 0 433
ENST00000437869 MEIS1-006 protein_coding Homo_sapiens 0 514
ENST00000450027 MEIS1-014 processed_transcript Homo_sapiens 0 235
ENST00000466811 MEIS1-011 processed_transcript Homo_sapiens 0 344
ENST00000475239 MEIS1-012 processed_transcript Homo_sapiens 0 215
ENST00000488550 MEIS1-002 protein_coding Homo_sapiens 0 1125
ENST00000490726 MEIS1-005 processed_transcript Homo_sapiens 0 658
ENST00000491706 MEIS1-008 retained_intron Homo_sapiens 0 435
ENST00000495021 MEIS1-016 protein_coding Homo_sapiens 0 859
ENST00000496248 MEIS1-009 processed_transcript Homo_sapiens 0 499
ENST00000498705 MEIS1-007 retained_intron Homo_sapiens 0 433
ENST00000542964 MEIS1-015 processed_transcript Homo_sapiens 0 235
ENST00000560281 MEIS1-019 protein_coding Homo_sapiens 0 1125
ENST00000606455 MEIS1-018 processed_transcript Homo_sapiens 0 313

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