C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: filamin B, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490882 FLNB-002 ENSG00000136068 9606 + 3:58008400-58170774 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverOvaryENST00000490882
Transcript ID Bladder Breast Colon Kidney Liver Ovary
ENST00000490882 3.709±0.00 2.693±0.00 6.029±0.00 3.374±0.00 5.447±0.00 4.448±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UM CIL_0002UM_0001 CGP 3:58008400-58214697

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IEA stress fiber
GO:0003779 NAS actin binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007016 TAS cytoskeletal anchoring at plasma membrane
GO:0007165 TAS signal transduction
GO:0007519 IEA skeletal muscle tissue development
GO:0015629 TAS actin cytoskeleton
GO:0016021 NAS integral component of membrane
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0030036 TAS actin cytoskeleton organization
GO:0030154 IEA cell differentiation
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052678 Flnb-001 protein_coding Mus_musculus 0 5116
ENSMUST00000101454 Flna-201 protein_coding Mus_musculus 0 804
ENSMUST00000130007 Flna-013 protein_coding Mus_musculus 0 804
ENSMUST00000033699 Flna-003 protein_coding Mus_musculus 0 804
ENSMUST00000114299 Flna-002 protein_coding Mus_musculus 0 804
ENSMUST00000144429 Flna-001 nonsense_mediated_decay Mus_musculus 0 804
ENSMUST00000090474 Flnc-201 protein_coding Mus_musculus 0 771
ENSMUST00000065090 Flnc-002 protein_coding Mus_musculus 0 771
ENSMUST00000101617 Flnc-001 protein_coding Mus_musculus 0 771
ENSMUST00000148404 Flnc-003 retained_intron Mus_musculus 0 518

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